RegulonDB RegulonDB 10.9: Gene Form
   

opgC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

opgG clsC opgC opgH TSS_1329 (cluster) TSS_1329 (cluster) TSS_1328 TSS_1328 opgGp1 opgGp1 opgGp2 opgGp2

Gene      
Name: opgC    Texpresso search in the literature
Synonym(s): ECK1033, G6552, b1047, mdoC, ymdD
Genome position(nucleotides): 1107784 <-- 1108941 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.87
External database links:  
ASAP:
ABE-0003553
ECHOBASE:
EB3635
ECOLIHUB:
mdoC
OU-MICROARRAY:
b1047
STRING:
511145.b1047
COLOMBOS: opgC


Product      
Name: osmoregulated periplasmic glucans biosynthesis protein C
Synonym(s): MdoC, OpgC, YmdD, protein required for succinyl modification of osmoregulated periplasmic glucans
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 44.69
Isoelectric point: 10.131
Motif(s):
 
Type Positions Sequence
173 -> 193 KFSMVKLSVIFLCLGIGYAVI
311 -> 331 ASLFIYLVHHPLTLFFGAYIT
91 -> 111 VGIPMLTAIPLLTLPQFIMLQ
137 -> 157 ISHLWFLLVLVVMTTLCVWIF
17 -> 37 AWLMLLGIPFHISLIYSSHTW

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.6 - osmoregulated periplasmic glucan
  5 - cell processes --> 5.5 - adaptations --> 5.5.1 - osmotic pressure
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0016741 - transferase activity, transferring one-carbon groups
GO:0016740 - transferase activity
GO:0016746 - transferase activity, transferring acyl groups
GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups
GO:0016748 - succinyltransferase activity
biological_process GO:0009250 - glucan biosynthetic process
GO:0009311 - oligosaccharide metabolic process
Note(s): Note(s): ...[more].
Evidence: [IGI] Inferred from genetic interaction
Reference(s): [1] Lacroix JM., et al., 1999
External database links:  
ECOCYC:
G6552-MONOMER
ECOLIWIKI:
b1047
INTERPRO:
IPR023723
INTERPRO:
IPR002656
PFAM:
PF01757
PRIDE:
P75920
PRODB:
PRO_000023178
REFSEQ:
NP_415565
UNIPROT:
P75920


Operon      
Name: opgC         
Operon arrangement:
Transcription unit        Promoter
mdoC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1328 1110128 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1329 (cluster) 1110416 forward For this promoter, there
Read more >
[RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Lacroix JM., Lanfroy E., Cogez V., Lequette Y., Bohin A., Bohin JP., 1999, The mdoC gene of Escherichia coli encodes a membrane protein that is required for succinylation of osmoregulated periplasmic glucans., J Bacteriol 181(12):3626-31

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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