RegulonDB RegulonDB 11.2: Gene Form
   

ychS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

narI ychS rttR tpr Cis-reg Cis-reg Cis-reg terminator tprp1 tprp1

Gene      
Name: ychS    Texpresso search in the literature
Synonym(s): ECK1222, G6631, b1228
Genome position(nucleotides): 1286709 --> 1286984
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 59.42
External database links:  
ASAP:
 ABE-0004129
ECHOBASE:
 EB4338
ECOLIHUB:
 ychS
ECOO157CYC:
 Z2005
OU-MICROARRAY:
 b1228
STRING:
 316407.85674881
COLOMBOS: ychS


Product      
Name: putative uncharacterized protein YchS
Synonym(s): YchS
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 9.607
Isoelectric point: 8.96
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P76023
ECOCYC:
 G6631-MONOMER
ECOLIWIKI:
 b1228
ECOO157CYC:
 Z2005-MONOMER
PRIDE:
 P76023
REFSEQ:
 NP_415746
UNIPROT:
 P76023


Operon      
Name: ychS         
Operon arrangement:
Transcription unit        Promoter
ychS


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tprp1 1287188 reverse nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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