RegulonDB

RegulonDB RegulonDB 11.1: Gene Form

rzpR gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	rzpR
Synonym(s):	ECK1360, G6686, b1362, ydaX
Type:	Pseudo Gene
Genome position(nucleotides):	1423345 --> 1423644
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.33
External database links:

ASAP:	ABE-0004564
ECHOBASE:	EB3149
ECOLIHUB:	rzpR
ECOO157CYC:	Z0961
ECOO157CYC:	Z3101
ECOO157CYC:	Z2369
ECOO157CYC:	Z3336
ECOO157CYC:	Z1354
ECOO157CYC:	Z1798
ECOO157CYC:	Z1877
ECOO157CYC:	Z2118
OU-MICROARRAY:	b1362
STRING:	316407.85674926
COLOMBOS:	rzpR

Product

Name:

Rac prophage; putative endopeptidase RzpR

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

7.263

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0005829 - cytosol

Note(s):

Note(s): ...[more].

External database links:

ALPHAFOLD:

ECOCYC:

ECOLIWIKI:

ECOO157CYC:

ECOO157CYC:

ECOO157CYC:

ECOO157CYC:

ECOO157CYC:

ECOO157CYC:

ECOO157CYC:

ECOO157CYC:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ydaSTUVW-rzpR

Operon arrangement:

Transcription unit	Promoter
ydaSTUVW-rzpR

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	trkGp7	1423671		forward	nd	[COMP-AINF]	[1]
	promoter	trkGp1	1423741		forward	nd	[COMP-AINF]	[1]
	promoter	trkGp8	1423749		forward	nd	[COMP-AINF]	[1]
	promoter	ynaKp10	1425219		forward	nd	[COMP-AINF]	[1]

Evidence
[COMP-AINF] Inferred computationally without human oversight

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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