RegulonDB RegulonDB 10.9: Gene Form
   

tfaR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

stfR insH5 pinR tfaR terminator anti-terminator anti-anti-terminator insHp3 insHp3

Gene      
Name: tfaR    Texpresso search in the literature
Synonym(s): ECK1368, G6696, b1373, ynaC
Genome position(nucleotides): 1432411 --> 1432986 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.09
External database links:  
ASAP:
ABE-0004597
ECHOBASE:
EB3153
ECOLIHUB:
tfaR
ECOO157CYC:
Z2983
OU-MICROARRAY:
b1373
STRING:
511145.b1373
COLOMBOS: tfaR


Product      
Name: Rac prophage; putative tail fiber assembly protein TfaR
Synonym(s): TfaR, YnaC
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 21.337
Isoelectric point: 4.202
Motif(s):
 
Type Positions Sequence
72 -> 191 RGKTVYDVASGNALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6696-MONOMER
ECOLIWIKI:
b1373
ECOO157CYC:
Z2983-MONOMER
INTERPRO:
IPR003458
PFAM:
PF02413
PRIDE:
P77163
REFSEQ:
NP_415891
UNIPROT:
P77163


Operon      
Name: stfR-tfaR         
Operon arrangement:
Transcription unit        Promoter
stfR-tfaR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter insHp3 1428926 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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