RegulonDB RegulonDB 11.1: Gene Form
   

ECK120003329 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

opgD ydcJ ydcH unknown anti-terminator anti-anti-terminator rimLp rimLp TSS_1808 TSS_1808 TSS_1807 TSS_1807 TSS_1806 TSS_1806 opgDp9 opgDp9 opgDp7 opgDp7 opgDp8 opgDp8 opgDp4 opgDp4

Gene      
Synonym(s): G6740, b1425
Type: Phantom Gene
Genome position(nucleotides): 1498432 <-- 1498635
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 47.06
External database links:  
ECOLIHUB:
 G6740
OU-MICROARRAY:
 b1425


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter opgDp4 1496645 forward nd [COMP-AINF] [1]
  promoter opgDp8 1496655 forward nd [COMP-AINF] [1]
  promoter opgDp7 1496682 forward nd [COMP-AINF] [1]
  promoter opgDp9 1496776 forward nd [COMP-AINF] [1]
  promoter TSS_1806 1497690 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1807 1497713 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1808 1497832 forward nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

RegulonDB