RegulonDB RegulonDB 10.9: Gene Form
   

yncI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydcC yncI yncO ydcD terminator pptAp6 pptAp6 pptAp7 pptAp7

Gene      
Name: yncI    Texpresso search in the literature
Synonym(s): ECK1452, ECK1453, G6767, b1458, b1459, yncM
Type: Pseudo Gene
Genome position(nucleotides): 1530586 --> 1531639 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
37.86
External database links:  
ASAP:
ABE-0285123
ASAP:
ABE-0004868
ASAP:
ABE-0004865
ECHOBASE:
EB4006
ECHOBASE:
EB4346
ECOLIHUB:
yncM
ECOLIHUB:
yncI
ECOLIWIKI:
b1459
OU-MICROARRAY:
b1458
OU-MICROARRAY:
b1459
STRING:
316407.85674976
UNIPROT:
P76119
COLOMBOS: yncI


Product      
Name: putative transposase YncI
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 8.946
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
GO:0004803 - transposase activity
biological_process GO:0006310 - DNA recombination
GO:0006313 - transposition, DNA-mediated
GO:0032196 - transposition
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-28080N
ECOCYC:
G6767-MONOMER
ECOLIWIKI:
b1458
INTERPRO:
IPR002559
INTERPRO:
IPR032806
PFAM:
PF13808
PFAM:
PF01609
PRIDE:
P76119
REFSEQ:
NP_415975
SMR:
P76119
UNIPROT:
P76119


Operon      
Name: yncI         
Operon arrangement:
Transcription unit        Promoter
yncI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter pptAp7 1532858 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter pptAp6 1532867 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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