RegulonDB RegulonDB 10.9: Gene Form
   

yddJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

narU yddK yddJ yddJp1 yddJp1 yddJp6 yddJp6 yddJp5 yddJp5 yddJp9 yddJp9 yddJp8 yddJp8 narUp2 narUp2 narUp1 narUp1 narZp narZp

Gene      
Name: yddJ    Texpresso search in the literature
Synonym(s): ECK1464, G6771, b1470
Type: Pseudo Gene
Genome position(nucleotides): 1544384 <-- 1544719 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
35.71
External database links:  
ASAP:
ABE-0004904
ECHOBASE:
EB3543
ECOLIHUB:
yddJ
ECOO157CYC:
Z2242
OU-MICROARRAY:
b1470
STRING:
511145.b1470
COLOMBOS: yddJ


Product      
Name: uncharacterized protein YddJ
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 4.584
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6771-MONOMER
ECOLIWIKI:
b1470
ECOO157CYC:
Z2242-MONOMER
PRIDE:
P76122
REFSEQ:
NP_415987
UNIPROT:
P76122


Operon      
Name: yddLKJ         
Operon arrangement:
Transcription unit        Promoter
yddLKJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter narZp 1542690 reverse Rpos has been proved to
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[AIPP], [ICWHO] [1]
  promoter yddJp8 1544758 reverse Similarity to the consensus
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[ICWHO] [1]
  promoter yddJp9 1544763 reverse Similarity to the consensus
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[ICWHO] [1]
  promoter yddJp5 1544825 reverse Similarity to the consensus
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[ICWHO] [1]
  promoter yddJp6 1544851 reverse Similarity to the consensus
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[ICWHO] [1]
  promoter yddJp1 1544866 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [AIPP] Automated inference of promoter position

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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