RegulonDB RegulonDB 10.9: Gene Form
   

rsxE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dtpA rsxE nth rsxG OmpR GadX anti-terminator anti-anti-terminator terminator TSS_1912 TSS_1912 TSS_1911 TSS_1911 tppBp tppBp TSS_1910 TSS_1910

Gene      
Name: rsxE    Texpresso search in the literature
Synonym(s): ECK1628, G6876, b1632, ydgQ
Genome position(nucleotides): 1710828 --> 1711523 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.73
External database links:  
ASAP:
ABE-0005461
ECHOBASE:
EB3697
ECOLIHUB:
rsxE
OU-MICROARRAY:
b1632
STRING:
511145.b1632
COLOMBOS: rsxE


Product      
Name: SoxR [2Fe-2S] reducing system protein RsxE
Synonym(s): RsxE, YdgQ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 24.459
Isoelectric point: 8.478
Motif(s):
 
Type Positions Sequence
182 -> 202 PFLLAMLPPGAFIGLGLMLAG
6 -> 199 DVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLM
86 -> 106 LINAYAFGLYQSLGIFIPLIV
125 -> 145 ALSALDGFSIGMGATCAMFVL
18 -> 38 ALVQLLGLCPLLAVTSTATNA

 

Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
  5 - cell processes --> 5.5 - adaptations --> 5.5.6 - other (mechanical, nutritional, oxidative stress)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0022900 - electron transport chain
GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
Evidence: [IHBCE] Inferred by a human based on computational evidence
[IMP] Inferred from mutant phenotype
Reference(s): [1] Koo MS., et al., 2003
External database links:  
ECOCYC:
G6876-MONOMER
ECOLIWIKI:
b1632
INTERPRO:
IPR010968
INTERPRO:
IPR003667
PANTHER:
PTHR30586:SF0
PFAM:
PF02508
PRIDE:
P77179
PRODB:
PRO_000023793
REFSEQ:
NP_416149
UNIPROT:
P77179


Operon      
Name: ydgK-rsxABCDGE-nth         
Operon arrangement:
Transcription unit        Promoter
ydgK-rsxABCDGE-nth
rsxABCDGE-nth


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1910 1711455 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1911 1712673 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1912 1713632 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Koo MS., Lee JH., Rah SY., Yeo WS., Lee JW., Lee KL., Koh YS., Kang SO., Roe JH., 2003, A reducing system of the superoxide sensor SoxR in Escherichia coli., EMBO J 22(11):2614-22

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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