RegulonDB RegulonDB 11.1: Gene Form
   

ydhP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydhP sodB cydH CRP terminator

Gene      
Name: ydhP    Texpresso search in the literature
Synonym(s): ECK1653, G6893, b1657
Genome position(nucleotides): 1736121 <-- 1737290
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.33
External database links:  
ASAP:
 ABE-0005540
ECHOBASE:
 EB3708
ECOLIHUB:
 ydhP
OU-MICROARRAY:
 b1657
STRING:
 511145.b1657
COLOMBOS: ydhP


Product      
Name: putative transporter YdhP
Synonym(s): YdhP
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 40.064
Isoelectric point: 10.73
Motif(s):
 
Type Positions Sequence Comment
7 -> 27 LLALAIGAFGIGTTEFSPMGL UniProt: Helical.
10 -> 342 LAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGA
44 -> 64 MLISAYAVGVMVGAPLMTLLL UniProt: Helical.
71 -> 91 SALIFLMAIFTLGNVLSAIAP UniProt: Helical.
101 -> 121 ILTSLNHGAFFGLGSVVAASV UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0005515 - protein binding
GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ALPHAFOLD:
 P77389
ECOCYC:
 B1657-MONOMER
ECOLIWIKI:
 b1657
INTERPRO:
 IPR020846
INTERPRO:
 IPR011701
INTERPRO:
 IPR036259
MODBASE:
 P77389
PFAM:
 PF07690
PRIDE:
 P77389
PROSITE:
 PS50850
REFSEQ:
 NP_416174
UNIPROT:
 P77389


Operon      
Name: ydhP         
Operon arrangement:
Transcription unit        Promoter
ydhP


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

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