RegulonDB RegulonDB 11.1: Gene Form
   

ydhW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydhV ydhX ydhW ydhU TSS_1958 TSS_1958

Gene      
Name: ydhW    Texpresso search in the literature
Synonym(s): ECK1668, G6900, b1672
Genome position(nucleotides): 1751077 <-- 1751724
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.31
External database links:  
ASAP:
 ABE-0005585
ECHOBASE:
 EB3715
ECOLIHUB:
 ydhW
OU-MICROARRAY:
 b1672
STRING:
 511145.b1672
COLOMBOS: ydhW


Product      
Name: uncharacterized protein YdhW
Synonym(s): YdhW
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 24.421
Isoelectric point: 4.266
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Awad A Al Ibrahim N., et al., 2017
External database links:  
ALPHAFOLD:
 P77564
ECOCYC:
 G6900-MONOMER
ECOLIWIKI:
 b1672
PRIDE:
 P77564
REFSEQ:
 NP_416187
UNIPROT:
 P77564


Operon      
Name: ydhYVWXUT         
Operon arrangement:
Transcription unit        Promoter
ydhYVWXUT
ydhXUT
ydhYVW


Transcriptional Regulation      
Display Regulation             
Activated by: FNR
Repressed by: NarL, NarP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1958 1752562 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Awad A Al Ibrahim N., Green J., 2017, Regulation of the Escherichia coli ydhY-T operon in the presence of alternative electron acceptors., Microbiology 163(4):584-594

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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