RegulonDB RegulonDB 11.1: Gene Form
   

yniA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yniA yniB ydiZ yniAp5 yniAp5 TSS_2040 TSS_2040 yniAp1 yniAp1 yniAp7 yniAp7

Gene      
Name: yniA    Texpresso search in the literature
Synonym(s): ECK1723, G6930, b1725
Genome position(nucleotides): 1807796 --> 1808656
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.92
External database links:  
ASAP:
 ABE-0005755
ECHOBASE:
 EB3742
ECOLIHUB:
 yniA
OU-MICROARRAY:
 b1725
STRING:
 511145.b1725
COLOMBOS: yniA


Product      
Name: putative kinase YniA
Synonym(s): YniA, putative phosphotransferase/kinase
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 32.459
Isoelectric point: 4.787
Motif(s):
 
Type Positions Sequence Comment
1 -> 285 MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFVKCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIAQQSLDRLLA
91 -> 93 DYL UniProt: ATP.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016740 - transferase activity
GO:0016301 - kinase activity
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
biological_process GO:0016310 - phosphorylation
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P77739
DIP:
 DIP-12775N
ECOCYC:
 G6930-MONOMER
ECOLIWIKI:
 b1725
INTERPRO:
 IPR011009
INTERPRO:
 IPR016477
MODBASE:
 P77739
PANTHER:
 PTHR12149
PFAM:
 PF03881
PRIDE:
 P77739
REFSEQ:
 NP_416239
SMR:
 P77739
UNIPROT:
 P77739


Operon      
Name: yniA         
Operon arrangement:
Transcription unit        Promoter
yniA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yniAp7 1807579 forward nd [COMP-AINF] [1]
  promoter yniAp1 1807719 forward nd [COMP-AINF] [1]
  promoter TSS_2040 1807770 forward nd [RS-EPT-CBR] [2]
  promoter yniAp5 1807775 forward nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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