RegulonDB RegulonDB 11.1: Gene Form
   

ydjO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tcyP ydjO cedA ydjOp4 ydjOp4 ydjOp4 ydjOp4 ydjOp10 ydjOp10 ydjOp7 ydjOp7 ydjOp9 ydjOp9 TSS_2045 (cluster) TSS_2045 (cluster)

Gene      
Name: ydjO    Texpresso search in the literature
Synonym(s): ECK1728, G6935, b1730
Genome position(nucleotides): 1812329 <-- 1813132
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 35.07
External database links:  
ASAP:
 ABE-0005773
ECHOBASE:
 EB3747
ECOLIHUB:
 ydjO
OU-MICROARRAY:
 b1730
STRING:
 511145.b1730
COLOMBOS: ydjO


Product      
Name: protein YdjO
Synonym(s): YdjO
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 30.16
Isoelectric point: 5.69
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P76210
ECOCYC:
 G6935-MONOMER
ECOLIWIKI:
 b1730
PRIDE:
 P76210
REFSEQ:
 NP_416244
SMR:
 P76210
UNIPROT:
 P76210


Operon      
Name: ydjO         
Operon arrangement:
Transcription unit        Promoter
ydjO


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2045 (cluster) 1811112 forward nd [RS-EPT-CBR] [1]
  promoter ydjOp9 1813153 reverse nd [COMP-AINF] [2]
  promoter ydjOp7 1813188 reverse nd [COMP-AINF] [2]
  promoter ydjOp10 1813255 reverse nd [COMP-AINF] [2]
  promoter ydjOp4 1813348 reverse nd [COMP-AINF] [2]
  promoter ydjOp4 1813348 reverse nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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