RegulonDB RegulonDB 11.1: Gene Form
   

yebY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yebZ yebY ryeA sdsR anti-anti-terminator anti-terminator terminator anti-anti-terminator anti-terminator terminator pphAp pphAp sdsRp sdsRp

Gene      
Name: yebY    Texpresso search in the literature
Synonym(s): ECK1840, G7012, b1839
Genome position(nucleotides): 1923365 <-- 1923706
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 45.91
External database links:  
ASAP:
 ABE-0006118
ECHOBASE:
 EB3781
ECOLIHUB:
 yebY
OU-MICROARRAY:
 b1839
STRING:
 511145.b1839
COLOMBOS: yebY


Product      
Name: DUF2511 domain-containing protein YebY
Synonym(s): YebY
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 12.378
Isoelectric point: 8.2
Motif(s):
 
Type Positions Sequence Comment
1 -> 20 MMKKSILAFLLLTSSAAALA
21 -> 113 APQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC UniProt: Uncharacterized protein YebY.
26 -> 113 TVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
biological_process GO:0055070 - copper ion homeostasis
Note(s): Note(s): ...[more].
Evidence: [EXP-IDA] Inferred from direct assay
Reference(s): [1] Hadley RC., et al., 2021
External database links:  
ALPHAFOLD:
 P64506
DIP:
 DIP-48174N
ECOCYC:
 G7012-MONOMER
ECOLIWIKI:
 b1839
INTERPRO:
 IPR019648
PFAM:
 PF10709
PRIDE:
 P64506
REFSEQ:
 NP_416353
SMR:
 P64506
UNIPROT:
 P64506


Operon      
Name: yobA-yebZY         
Operon arrangement:
Transcription unit        Promoter
yobA-yebZY


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Hadley RC., Zhitnitsky D., Livnat-Levanon N., Masrati G., Vigonsky E., Rose J., Ben-Tal N., Rosenzweig AC., Lewinson O., 2021, The copper-linked Escherichia coli AZY operon: Structure, metal binding, and a possible physiological role in copper delivery., J Biol Chem 298(1):101445

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