RegulonDB RegulonDB 11.1: Gene Form
   

yebZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yebZ yobA yebY anti-anti-terminator anti-terminator pphAp pphAp

Gene      
Name: yebZ    Texpresso search in the literature
Synonym(s): ECK1841, G7013, b1840
Genome position(nucleotides): 1923719 <-- 1924591
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.15
External database links:  
ASAP:
 ABE-0006120
ECHOBASE:
 EB3782
ECOLIHUB:
 yebZ
OU-MICROARRAY:
 b1840
STRING:
 511145.b1840
COLOMBOS: yebZ


Product      
Name: CopD family protein
Synonym(s): YebZ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 32.526
Isoelectric point: 11.433
Motif(s):
 
Type Positions Sequence Comment
11 -> 31 FIHFTSLMLVFGFAMYGAWLA UniProt: Helical.
50 -> 70 AAVWSLISATAMLAVQGGLMG UniProt: Helical.
90 -> 110 FGGIWLWQIVLALVTLIVALM UniProt: Helical.
118 -> 138 LLFMLTTAQFILLAGVGHATL UniProt: Helical.
152 -> 172 AIHLICAAAWFGGLLPVLWCM UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0006825 - copper ion transport
Note(s): Note(s): ...[more].
Reference(s): [1] Myers KS., et al., 2013
External database links:  
ALPHAFOLD:
 P76278
ECOCYC:
 G7013-MONOMER
ECOLIWIKI:
 b1840
INTERPRO:
 IPR008457
INTERPRO:
 IPR032694
PANTHER:
 PTHR34820
PFAM:
 PF05425
PRIDE:
 P76278
REFSEQ:
 NP_416354
SMR:
 P76278
UNIPROT:
 P76278


Operon      
Name: yobA-yebZY         
Operon arrangement:
Transcription unit        Promoter
yobA-yebZY


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Myers KS., Yan H., Ong IM., Chung D., Liang K., Tran F., Keles S., Landick R., Kiley PJ., 2013, Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding., PLoS Genet 9(6):e1003565

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