RegulonDB RegulonDB 11.1: Gene Form
   

yedS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yedS hchA rseX hchAp1 hchAp1 hchAp2 hchAp2 TSS_2278 TSS_2278 rseXp rseXp

Gene      
Name: yedS    Texpresso search in the literature
Synonym(s): ECK1962, G7052, b1964, b1965, b1966, b4496, yedT
Type: Pseudo Gene
Genome position(nucleotides): 2034051 --> 2035243
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 45.68
External database links:  
ASAP:
 ABE-0006518
ASAP:
 ABE-0006521
ASAP:
 ABE-0285097
ASAP:
 ABE-0006526
ECOLIHUB:
 yedS_1
ECOLIHUB:
 yedS_3
ECOLIHUB:
 yedS_2
ECOO157CYC:
 Z2333
ECOO157CYC:
 Z3057
OU-MICROARRAY:
 b1965
OU-MICROARRAY:
 b1964
OU-MICROARRAY:
 b1966
COLOMBOS: yedS


Product      
Name: putative outer membrane protein YedS, N-terminal fragment
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.366
Motif(s):
 
Type Positions Sequence Comment
1 -> 21 MKRKVLAMLVPALLVAGAANA
22 -> 161 AEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFG UniProt: Putative outer membrane protein YedS.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Warner DM., et al., 2013
[2] Zhi S., et al., 2016
External database links:  
ALPHAFOLD:
 P76335
ECOCYC:
 G7052-MONOMER
ECOLIWIKI:
 b1964
ECOO157CYC:
 Z3057-MONOMER
ECOO157CYC:
 Z2333-MONOMER
MODBASE:
 P76335
UNIPROT:
 P76335


Operon      
Name: yedS         
Operon arrangement:
Transcription unit        Promoter
yedS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2278 2035198 reverse nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Warner DM., Yang Q., Duval V., Chen M., Xu Y., Levy SB., 2013, Involvement of MarR and YedS in carbapenem resistance in a clinical isolate of Escherichia coli from China., Antimicrob Agents Chemother 57(4):1935-7

 [2] Zhi S., Li Q., Yasui Y., Banting G., Edge TA., Topp E., McAllister TA., Neumann NF., 2016, An evaluation of logic regression-based biomarker discovery across multiple intergenic regions for predicting host specificity in Escherichia coli., Mol Phylogenet Evol 103:133-42

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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