RegulonDB RegulonDB 10.10: Gene Form
   

yeeP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yeeP insC3 insCD3 isrC insD3 OxyR OxyR OxyR terminator anti-terminator anti-anti-terminator flup2 flup2 flup1 flup1 TSS_2311 TSS_2311 flup flup TSS_2310 (cluster) TSS_2310 (cluster)

Gene      
Name: yeeP    Texpresso search in the literature
Synonym(s): ECK1991, G7079, b1999
Type: Pseudo Gene
Genome position(nucleotides): 2070786 --> 2071211 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 60.09
External database links:  
ASAP:
 ABE-0006639
ECHOBASE:
 EB3165
ECOLIHUB:
 yeeP
OU-MICROARRAY:
 b1999
COLOMBOS: yeeP


Product      
Name: CP4-44 prophage; putative GTP-binding protein
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 6.249
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G7079-MONOMER
ECOLIWIKI:
 b1999
INTERPRO:
 IPR027417
PRIDE:
 P76359
REFSEQ:
 NP_416503
SMR:
 P76359
UNIPROT:
 P76359


Operon      
Name: yeeP         
Operon arrangement:
Transcription unit        Promoter
yeeP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2310 (cluster) 2070209 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2311 2071472 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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