RegulonDB RegulonDB 11.1: Gene Form
   

yfbP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

nuoN yfbP yfbO TSS_2533 TSS_2533 TSS_2532 TSS_2532 TSS_2531 TSS_2531 TSS_2530 TSS_2530 yfbPp7 yfbPp7

Gene      
Name: yfbP    Texpresso search in the literature
Synonym(s): ECK2269, G7182, b2275
Genome position(nucleotides): 2389116 --> 2389964
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 43.46
External database links:  
ASAP:
 ABE-0007524
ECHOBASE:
 EB3853
ECOLIHUB:
 yfbP
OU-MICROARRAY:
 b2275
STRING:
 511145.b2275
COLOMBOS: yfbP


Product      
Name: uncharacterized protein YfbP
Synonym(s): YfbP
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 32.136
Isoelectric point: 4.52
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P76486
ECOCYC:
 G7182-MONOMER
ECOLIWIKI:
 b2275
INTERPRO:
 IPR011990
PRIDE:
 P76486
REFSEQ:
 NP_416778
SMR:
 P76486
UNIPROT:
 P76486


Operon      
Name: yfbP         
Operon arrangement:
Transcription unit        Promoter
yfbP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfbPp7 2388995 forward nd [COMP-AINF] [1]
  promoter TSS_2530 2390949 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2531 2391121 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2532 2391223 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2533 2391462 forward nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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