RegulonDB RegulonDB 11.1: Gene Form
   

yfjU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfjW yfjV yfjT yfjU yfjWp5 yfjWp5 TSS_2982 TSS_2982

Gene      
Name: yfjU    Texpresso search in the literature
Synonym(s): ECK2634, G7373, b2638
Genome position(nucleotides): 2771840 <-- 2772154
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 41.59
External database links:  
ASAP:
 ABE-0008685
ECHOBASE:
 EB2999
ECOLIHUB:
 yfjU
OU-MICROARRAY:
 b2638
STRING:
 316407.85675501
COLOMBOS: yfjU


Product      
Name: CP4-57 prophage; putative arsenate reductase-like protein YfjU
Synonym(s): YfjU
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 11.824
Isoelectric point: 6.504
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016491 - oxidoreductase activity
biological_process GO:0046685 - response to arsenic-containing substance
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0CF86
ECOCYC:
 G7373-MONOMER
ECOLIWIKI:
 b2638
INTERPRO:
 IPR006660
INTERPRO:
 IPR036249
MODBASE:
 P52136
PRIDE:
 P0CF86
PROSITE:
 PS51353
REFSEQ:
 NP_417126
SMR:
 P0CF86
SWISSMODEL:
 P0CF86
UNIPROT:
 P0CF86


Operon      
Name: yfjU         
Operon arrangement:
Transcription unit        Promoter
yfjU


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2982 2771808 forward nd [RS-EPT-CBR] [1]
  promoter yfjWp5 2773285 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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