RegulonDB RegulonDB 10.9: Gene Form
   

ygaQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygaQ glaH unknown ileY GlaR GlaR CRP ppGpp anti-anti-terminator anti-terminator terminator csiDp csiDp

Gene      
Name: ygaQ    Texpresso search in the literature
Synonym(s): ECK2649, G7389, G7391, G7392, G7393, b2654, b2655, b2656, b2657, b2658, b4462, ygaR, yqaC, yqaD
Type: Pseudo Gene
Genome position(nucleotides): 2786397 --> 2788649 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
37.24
Note(s): ygaQ_1, ygaQ_2, ygaQ_3 and ygaQ_4 may be fragments of a pseudogene Homma K,2002. A full length gene is found in E. coli SMS-3-5, E. coli IAI39 and others and encodes a protein belonging to the alpha amylase family.
External database links:  
ASAP:
ABE-0008739
ASAP:
ABE-0174112
ASAP:
ABE-0008751
ASAP:
ABE-0008747
ASAP:
ABE-0285128
ECHOBASE:
EB3293
ECHOBASE:
EB3294
ECHOBASE:
EB4058
ECHOBASE:
EB4059
ECOLIHUB:
ygaQ_3
ECOLIHUB:
ygaQ_4
ECOLIHUB:
ygaQ_2
ECOLIHUB:
ygaQ_1
ECOLIWIKI:
b2657
ECOLIWIKI:
b4462
ECOLIWIKI:
b2658
ECOLIWIKI:
b2654
ECOO157CYC:
Z3954
OU-MICROARRAY:
b2656
OU-MICROARRAY:
b2657
OU-MICROARRAY:
b2658
OU-MICROARRAY:
b2654
STRING:
316407.85675510
UNIPROT:
P76616
COLOMBOS: ygaQ


Product      
Name: putative uncharacterized protein YgaQ
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.19
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0003824 - catalytic activity
biological_process GO:0005975 - carbohydrate metabolic process
Reference(s): [1] Li S., et al., 2020
External database links:  
ECOCYC:
G7389-MONOMER
UNIPROT:
P76616


Operon      
Name: ygaQ         
Operon arrangement:
Transcription unit        Promoter
ygaQ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Li S., Jendresen CB., Landberg J., Pedersen LE., Sonnenschein N., Jensen SI., Nielsen AT., 2020, Genome-Wide CRISPRi-Based Identification of Targets for Decoupling Growth from Production., ACS Synth Biol 9(5):1030-1040


RegulonDB