RegulonDB RegulonDB 11.1: Gene Form
   

yqaE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

kbp ygaV yqaE CpxR TSS_2990 TSS_2990 TSS_2989 TSS_2989 yqaEp yqaEp TSS_2988 TSS_2988 kbpp4 kbpp4 TSS_2987 TSS_2987

Gene      
Name: yqaE    Texpresso search in the literature
Synonym(s): ECK2660, G7396, b2666
Genome position(nucleotides): 2796870 <-- 2797028
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.94
External database links:  
ASAP:
 ABE-0008770
ECHOBASE:
 EB4060
ECOLIHUB:
 yqaE
OU-MICROARRAY:
 b2666
STRING:
 511145.b2666
COLOMBOS: yqaE


Product      
Name: Pmp3 family protein YqaE
Synonym(s): YqaE
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 5.865
Isoelectric point: 10.452
Motif(s):
 
Type Positions Sequence Comment
1 -> 21 MGFWRIVITIILPPLGVLLGK UniProt: Helical.
3 -> 48 FWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWV
23 -> 43 FGWAFIINILLTLLGYIPGLI UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0046677 - response to antibiotic
Note(s): Note(s): ...[more].
Reference(s): [1] Vogt SL., et al., 2014
External database links:  
ALPHAFOLD:
 P0AE42
ECOCYC:
 G7396-MONOMER
ECOLIWIKI:
 b2666
INTERPRO:
 IPR000612
PANTHER:
 PTHR21659
PFAM:
 PF01679
PRIDE:
 P0AE42
PROSITE:
 PS01309
REFSEQ:
 NP_417152
UNIPROT:
 P0AE42


Operon      
Name: yqaE-kbp         
Operon arrangement:
Transcription unit        Promoter
kbp
yqaE
yqaE-kbp


Transcriptional Regulation      
Display Regulation             
Activated by: CpxR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2987 2796813 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2988 2796815 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2989 2797187 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2990 2797266 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Vogt SL., Evans AD., Guest RL., Raivio TL., 2014, The Cpx envelope stress response regulates and is regulated by small noncoding RNAs., J Bacteriol 196(24):4229-38

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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