RegulonDB RegulonDB 11.1: Gene Form
   

ygcU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygcU ygcS ygcW ygcR ygcUp5 ygcUp5

Gene      
Name: ygcU    Texpresso search in the literature
Synonym(s): ECK2767, G7439, b2772, b2773, b4463, ygcT, ygcV
Genome position(nucleotides): 2897964 <-- 2899418
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.52
External database links:  
ASAP:
 ABE-0174094
ECHOBASE:
 EB2929
ECOLIHUB:
 ygcU
MIM:
 600121
OU-MICROARRAY:
 b2773
STRING:
 511145.b4463
COLOMBOS: ygcU


Product      
Name: putative FAD-containing dehydrogenase
Synonym(s): YgcT, YgcU, YgcV
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 53.737
Isoelectric point: 6.364
Motif(s):
 
Type Positions Sequence Comment
47 -> 226 TLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKF UniProt: FAD-binding PCMH-type.
51 -> 190 PAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRI
229 -> 477 ENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTG

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003824 - catalytic activity
GO:0016491 - oxidoreductase activity
GO:0050660 - flavin adenine dinucleotide binding
GO:0071949 - FAD binding
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 Q46911
DIP:
 DIP-12136N
ECOCYC:
 G7439-MONOMER
ECOLIWIKI:
 b4463
INTERPRO:
 IPR016166
INTERPRO:
 IPR016164
INTERPRO:
 IPR006094
INTERPRO:
 IPR016169
INTERPRO:
 IPR036318
INTERPRO:
 IPR004113
INTERPRO:
 IPR016167
MODBASE:
 Q46911
PFAM:
 PF01565
PFAM:
 PF02913
PRIDE:
 Q46911
PROSITE:
 PS51387
REFSEQ:
 YP_026183
SMR:
 Q46911
UNIPROT:
 Q46911


Operon      
Name: ygcU         
Operon arrangement:
Transcription unit        Promoter
ygcU


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ygcUp5 2899607 reverse nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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