RegulonDB RegulonDB 10.9: Gene Form
   

yqeG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yqeG yqeF yqeH terminator yqeHp4 yqeHp4 yqeHp5 yqeHp5 yqeGp8 yqeGp8 yqeFp11 yqeFp11 yqeGp5 yqeGp5 yqeGp1 yqeGp1 yqeFp8 yqeFp8 yqeFp1 yqeFp1 TSS_3141 TSS_3141

Gene      
Name: yqeG    Texpresso search in the literature
Synonym(s): ECK2843, G7465, b2845
Genome position(nucleotides): 2985847 --> 2987076 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
44.47
External database links:  
ASAP:
ABE-0009345
ECHOBASE:
EB2901
ECOLIHUB:
yqeG
OU-MICROARRAY:
b2845
STRING:
511145.b2845
COLOMBOS: yqeG


Product      
Name: putative transporter YqeG
Synonym(s): YqeG
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 45.099
Isoelectric point: 9.399
Motif(s):
 
Type Positions Sequence
88 -> 108 LITTLYFIAFFVVVLIYAVAI
236 -> 256 VAYLIICISVLFFVFSCLLSI
354 -> 374 AISMIYAISGPLIAMILFIMP
16 -> 379 LYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHMVIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPLIAYFLFLSIYLVGSWQPDLLTTQVEFNQNTLHQIWISIPVMVFAFSHTPIISTFAIDRREKYGEHAMDKCKKIMKVAYLIICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRALSIMLVSLITFIVCCINPNAISMIYAISGPLIAMILFIMPTLSTY
194 -> 214 IWISIPVMVFAFSHTPIISTF

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0003333 - amino acid transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
B2845-MONOMER
ECOLIWIKI:
b2845
INTERPRO:
IPR018227
PFAM:
PF03222
PRIDE:
P63340
REFSEQ:
NP_417322
UNIPROT:
P63340


Operon      
Name: yqeG         
Operon arrangement:
Transcription unit        Promoter
yqeG


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3141 2985613 reverse nd [RS-EPT-CBR] [2]
  promoter yqeFp1 2985624 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter yqeFp8 2985701 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter yqeGp1 2985719 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter yqeGp5 2985741 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter yqeFp11 2985809 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter yqeGp8 2985819 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter yqeHp5 2987508 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter yqeHp4 2987513 forward Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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