RegulonDB RegulonDB 10.9: Gene Form
   

yqfE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

argP rpiA yqfE ArgP PhoB ArgP anti-anti-terminator anti-terminator terminator argPp argPp TSS_3206 TSS_3206 TSS_3205 (cluster) TSS_3205 (cluster) rpiAp rpiAp

Gene      
Name: yqfE    Texpresso search in the literature
Synonym(s): ECK2911, G7515, b2915
Type: Pseudo Gene
Genome position(nucleotides): 3059381 <-- 3059611 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.98
External database links:  
ASAP:
ABE-0009570
ECHOBASE:
EB2955
ECOLIHUB:
yqfE
OU-MICROARRAY:
b2915
STRING:
316407.85675726
COLOMBOS: yqfE


Product      
Name: putative protein YqfE
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 11.389
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7515-MONOMER
ECOLIWIKI:
b2915
INTERPRO:
IPR005119
PFAM:
PF03466
PRIDE:
P64562
REFSEQ:
NP_417390
SMR:
P64562
UNIPROT:
P64562


Operon      
Name: yqfE         
Operon arrangement:
Transcription unit        Promoter
yqfE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3205 (cluster) 3059719 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3206 3059729 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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