RegulonDB RegulonDB 10.9: Gene Form
   

scpB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

scpC argK scpB scpA ygfI

Gene      
Name: scpB    Texpresso search in the literature
Synonym(s): ECK2915, G7516, b2919, ygfG
Genome position(nucleotides): 3063993 --> 3064778 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.36
External database links:  
ASAP:
ABE-0009581
ECHOBASE:
EB2799
ECOLIHUB:
scpB
OU-MICROARRAY:
b2919
STRING:
511145.b2919
COLOMBOS: scpB


Product      
Name: methylmalonyl-CoA decarboxylase
Synonym(s): ScpB, YgfG
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 29.173
Isoelectric point: 6.033
Motif(s):
 
Type Positions Sequence
12 -> 259 NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV
64 -> 68 AGHDI

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.7 - central intermediary metabolism --> 1.7.1 - unassigned reversible reactions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003824 - catalytic activity
GO:0016829 - lyase activity
GO:0016831 - carboxy-lyase activity
GO:0004300 - enoyl-CoA hydratase activity
GO:0004492 - methylmalonyl-CoA decarboxylase activity
biological_process GO:0006635 - fatty acid beta-oxidation
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7516-MONOMER
ECOLIWIKI:
b2919
INTERPRO:
IPR029045
INTERPRO:
IPR018376
INTERPRO:
IPR001753
INTERPRO:
IPR014748
MODBASE:
P52045
PDB:
6N95
PDB:
6N96
PDB:
6N97
PDB:
1EF8
PDB:
1EF9
PDB:
6N92
PDB:
6N93
PDB:
6N94
PFAM:
PF00378
PRIDE:
P52045
PRODB:
PRO_000023250
PROSITE:
PS00166
REFSEQ:
NP_417394
SMR:
P52045
UNIPROT:
P52045


Operon      
Name: scpA-argK-scpBC         
Operon arrangement:
Transcription unit        Promoter
scpA-argK-scpBC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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