RegulonDB

Gene
Name:	yqgD
Synonym(s):	ECK2936, G7523, b2941
Genome position(nucleotides):	3086399 <-- 3086650 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	42.86
External database links:

ASAP:	ABE-0009645
ECHOBASE:	EB2958
ECOLIHUB:	yqgD
OU-MICROARRAY:	b2941
COLOMBOS:	yqgD

Product

Name:

DUF2684 domain-containing protein YqgD

Synonym(s):

YqgD

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

9.519

Isoelectric point:

9.721

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

yqgD

Operon arrangement:

Transcription unit	Promoter
yqgD

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yqgBp4	3086182	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 4.315. P-value: 1.670e-5 Read more >	[ICWHO]	[1]
promoter	yqgBp1	3086250	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -2.06. P-value: 2.983e-5 Read more >	[ICWHO]	[1]
promoter	TSS_3266	3086683	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_3267 (cluster)	3087216	forward	For this promoter, there is a cluster of 3 transcription start sites,in the interval 3087216 to 3087218, where the highest frequency is at position 3085238. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	TSS_3268	3087246	forward	nd	[RS-EPT-CBR]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)