RegulonDB RegulonDB 10.9: Gene Form
   

ygjK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygjK fadH ygjJ ArcA FadR CRP HipB fadHp fadHp

Gene      
Name: ygjK    Texpresso search in the literature
Synonym(s): ECK3070, G7599, b3080
Genome position(nucleotides): 3228888 --> 3231239 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.46
External database links:  
ASAP:
 ABE-0010118
ECHOBASE:
 EB2581
ECOLIHUB:
 ygjK
OU-MICROARRAY:
 b3080
STRING:
 511145.b3080
COLOMBOS: ygjK


Product      
Name: glycoside hydrolase
Synonym(s): YgjK
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 88.321
Isoelectric point: 6.071
Motif(s):
 
Type Positions Sequence
23 -> 783 ANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALVQKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ
254 -> 299 LLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDAT
24 -> 254 NADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALVQKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHL
300 -> 783 PEQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ
1 -> 23 MKIKTILTPVTCALLISFSAHAA

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
molecular_function GO:0016787 - hydrolase activity
GO:0046872 - metal ion binding
GO:0015926 - glucosidase activity
GO:0016798 - hydrolase activity, acting on glycosyl bonds
GO:0004555 - alpha,alpha-trehalase activity
biological_process GO:0008152 - metabolic process
GO:0005975 - carbohydrate metabolic process
GO:0006974 - cellular response to DNA damage stimulus
GO:0005991 - trehalose metabolic process
Note(s): Note(s): ...[more].
External database links:  
CAZY:
 GH63
ECOCYC:
 G7599-MONOMER
ECOLIWIKI:
 b3080
INTERPRO:
 IPR012341
INTERPRO:
 IPR008928
INTERPRO:
 IPR001661
MINT:
 P42592
MODBASE:
 P42592
PANTHER:
 PTHR23403
PDB:
 5GW7
PDB:
 3W7S
PDB:
 3W7T
PDB:
 3W7U
PDB:
 3W7W
PDB:
 5CA3
PDB:
 3W7X
PDB:
 3D3I
PFAM:
 PF01204
PRIDE:
 P42592
REFSEQ:
 NP_417551
SMR:
 P42592
UNIPROT:
 P42592


Operon      
Name: ygjJK         
Operon arrangement:
Transcription unit        Promoter
ygjJK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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