RegulonDB RegulonDB 10.10: Gene Form
   

yhbW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

mtr yhbW ubiV TSS_3430 (cluster) TSS_3430 (cluster) TSS_3429 TSS_3429

Gene      
Name: yhbW    Texpresso search in the literature
Synonym(s): ECK3148, G7654, b3160
Genome position(nucleotides): 3303448 --> 3304455 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 55.85
External database links:  
ASAP:
 ABE-0010385
ECHOBASE:
 EB2644
ECOLIHUB:
 yhbW
OU-MICROARRAY:
 b3160
STRING:
 511145.b3160
COLOMBOS: yhbW


Product      
Name: putative luciferase-like monooxygenase YhbW
Synonym(s): YhbW
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 37.129
Isoelectric point: 6.453
Motif(s):
 
Type Positions Sequence
19 -> 302 GSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRET

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016491 - oxidoreductase activity
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-48197N
ECOCYC:
 G7654-MONOMER
ECOLIWIKI:
 b3160
INTERPRO:
 IPR019949
INTERPRO:
 IPR036661
INTERPRO:
 IPR011251
MODBASE:
 P0ADV5
PFAM:
 PF00296
PRIDE:
 P0ADV5
REFSEQ:
 NP_417629
SMR:
 P0ADV5
UNIPROT:
 P0ADV5


Operon      
Name: yhbW         
Operon arrangement:
Transcription unit        Promoter
yhbW


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3429 3303412 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3430 (cluster) 3303422 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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