Gene
Name:	mtgA
Synonym(s):	ECK3197, G7668, b3208, mgt, yrbM
Genome position(nucleotides):	3349081 <-- 3349809 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.99
External database links:

ASAP:	ABE-0010530
ECHOBASE:	EB2659
ECOLIHUB:	mtgA
OU-MICROARRAY:	b3208
STRING:	511145.b3208
COLOMBOS:	mtgA

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_3527	3348325	reverse	nd	[RS-EPT-CBR]	[3]
promoter	TSS_3528 (cluster)	3348425	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 3348425 to 3348426, where the highest frequency is at position 3346447. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	mtgAp4	3349831	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.9. P-value: 5.829e-5 Read more >	[ICWHO]	[4]
promoter	TSS_3529	3350497	reverse	nd	[RS-EPT-CBR]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Faure D., Frederick R., Wloch D., Portier P., Blot M., Adams J., 2004, Genomic changes arising in long-term stab cultures of Escherichia coli., J Bacteriol 186(19):6437-42
[2] Spratt BG., Zhou J., Taylor M., Merrick MJ., 1996, Monofunctional biosynthetic peptidoglycan transglycosylases., Mol Microbiol 19(3):639-40
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78