RegulonDB RegulonDB 10.10: Gene Form
   

yzgL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

glgP glpD yzgL GlpR GlpR anti-anti-terminator anti-terminator terminator TSS_4030 TSS_4030 TSS_4029 TSS_4029 TSS_4028 TSS_4028 TSS_4027 TSS_4027

Gene      
Name: yzgL    Texpresso search in the literature
Synonym(s): ECK3413, G7752, b3427
Genome position(nucleotides): 3563724 <-- 3564005 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.1
External database links:  
ASAP:
ABE-0011194
ECHOBASE:
EB4367
ECOLIHUB:
yzgL
ECOO157CYC:
Z4789
OU-MICROARRAY:
b3427
STRING:
316407.85676615
COLOMBOS: yzgL


Product      
Name: putative uncharacterized protein YzgL
Synonym(s): YzgL
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 10.129
Isoelectric point: 8.2
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7752-MONOMER
ECOLIWIKI:
b3427
ECOO157CYC:
Z4789-MONOMER
REFSEQ:
NP_417885
UNIPROT:
P76692


Operon      
Name: yzgL         
Operon arrangement:
Transcription unit        Promoter
yzgL


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4027 3564324 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4028 3565337 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4029 3565453 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4030 3566562 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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