RegulonDB RegulonDB 11.1: Gene Form
   

yjhD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insI3 yjhE yjhD ythA anti-anti-terminator anti-terminator terminator terminator terminator TSS_5123 TSS_5123

Gene      
Name: yjhD    Texpresso search in the literature
Synonym(s): ECK4271, G7902, b4281
Type: Pseudo Gene
Genome position(nucleotides): 4506626 <-- 4506856
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 47.62
External database links:  
ASAP:
 ABE-0014029
ECHOBASE:
 EB2434
ECOLIHUB:
 yjhD
OU-MICROARRAY:
 b4281
COLOMBOS: yjhD


Product      
Name: KpLE2 phage-like element; surface adhesin E-like protein
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.176
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P39354
ECOCYC:
 G7902-MONOMER
ECOLIWIKI:
 b4281
INTERPRO:
 IPR031939
PFAM:
 PF16747
PRIDE:
 P39354
REFSEQ:
 NP_418701
UNIPROT:
 P39354


Operon      
Name: yjhD         
Operon arrangement:
Transcription unit        Promoter
yjhD


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5123 4507785 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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