RegulonDB RegulonDB 11.1: Gene Form
   

yjhE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insI3 yjhE yjhD ythA anti-anti-terminator anti-terminator terminator terminator terminator TSS_5123 TSS_5123

Gene      
Name: yjhE    Texpresso search in the literature
Synonym(s): ECK4272, G7903, b4282
Type: Pseudo Gene
Genome position(nucleotides): 4506861 --> 4507109
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.59
External database links:  
ASAP:
 ABE-0014033
ECHOBASE:
 EB2435
ECOLIHUB:
 yjhE
OU-MICROARRAY:
 b4282
COLOMBOS: yjhE


Product      
Name: KpLE2 phage-like element; putative membrane protein (pseudogene)
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 4.673
Motif(s):
 
Type Positions Sequence Comment
29 -> 49 LMNAGSAVADIISPIAFGIII UniProt: Helical.
55 -> 75 WSLPFYGSVALLVIGIFLTFF UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Sun L., et al., 2016
External database links:  
ALPHAFOLD:
 P39355
ECOCYC:
 G7903-MONOMER
ECOLIWIKI:
 b4282
INTERPRO:
 IPR024671
INTERPRO:
 IPR020846
INTERPRO:
 IPR036259
PFAM:
 PF11700
PRIDE:
 P39355
PROSITE:
 PS50850
REFSEQ:
 NP_418702
SMR:
 P39355
UNIPROT:
 P39355


Operon      
Name: yjhE         
Operon arrangement:
Transcription unit        Promoter
yjhE


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5123 4507785 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Sun L., Yang F., Zhu T., Li X., Sun H., Li Y., Xu Z., Zhang Y., 2016, [Optimization of 1,2,4-butanetriol synthetic pathway in Escherichia coli]., Sheng Wu Gong Cheng Xue Bao 32(1):51-63

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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