RegulonDB RegulonDB 11.1: Gene Form
   

yjhV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insI3 fecE yjhV insM terminator anti-terminator anti-anti-terminator terminator insIp5 insIp5 TSS_5123 TSS_5123

Gene      
Name: yjhV    Texpresso search in the literature
Synonym(s): ECK4276, G7907, b4286
Type: Pseudo Gene
Genome position(nucleotides): 4509804 --> 4510133
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.94
External database links:  
ASAP:
 ABE-0014055
ECHOBASE:
 EB4377
ECOLIHUB:
 yjhV
ECOLIWIKI:
 b4286
OU-MICROARRAY:
 b4286
STRING:
 316407.85677027
UNIPROT:
 Q47719
COLOMBOS: yjhV


Product      
Name: KpLE2 phage-like element; putative uncharacterized protein YjhV
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 5.677
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 Q47719
ECOCYC:
 G7907-MONOMER
ECOLIWIKI:
 b4286
INTERPRO:
 IPR016040
PRIDE:
 Q47719
REFSEQ:
 NP_418706
SMR:
 Q47719
UNIPROT:
 Q47719


Operon      
Name: yjhV         
Operon arrangement:
Transcription unit        Promoter
yjhV


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5123 4507785 forward nd [RS-EPT-CBR] [1]
  promoter insIp5 4508686 reverse nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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