RegulonDB RegulonDB 11.0: Gene Form
   

yjiK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjiJ yjiK ytiA yjiL yjiKp9 yjiKp9 yjiKp7 yjiKp7 yjiKp6 yjiKp6 yjiJp4 yjiJp4

Gene      
Name: yjiK    Texpresso search in the literature
Synonym(s): ECK4324, G7930, b4333
Genome position(nucleotides): 4562743 <-- 4563603
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.62
External database links:  
ASAP:
ABE-0014209
ECHOBASE:
EB2460
ECOLIHUB:
yjiK
OU-MICROARRAY:
b4333
STRING:
511145.b4333
COLOMBOS: yjiK


Product      
Name: PF06977 family protein YjiK
Synonym(s): YjiK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 31.956
Isoelectric point: 6.402
Motif(s):
 
Type Positions Sequence Comment
7 -> 28 LSKRISIIVILFAIVAVCTFFV
11 -> 31 ISIIVILFAIVAVCTFFVQSC UniProt: Helical.
37 -> 281 HAASFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Rao S., et al., 2020
[2] Song S., et al., 2020
External database links:  
ALPHAFOLD:
P39382
ECOCYC:
G7930-MONOMER
ECOLIWIKI:
b4333
INTERPRO:
IPR009722
PFAM:
PF06977
PRIDE:
P39382
PROSITE:
PS51257
REFSEQ:
NP_418753
SMR:
P39382
UNIPROT:
P39382


Operon      
Name: yjiK         
Operon arrangement:
Transcription unit        Promoter
yjiK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yjiJp4 4562682 reverse nd [ICWHO] [3]
  promoter yjiKp6 4563635 reverse nd [ICWHO] [3]
  promoter yjiKp7 4563730 reverse nd [ICWHO] [3]
  promoter yjiKp9 4563734 reverse nd [ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Rao S., Bates GT., Matthews CR., Newport TD., Vickery ON., Stansfeld PJ., 2020, Characterizing Membrane Association and Periplasmic Transfer of Bacterial Lipoproteins through Molecular Dynamics Simulations., Structure 28(4):475-487.e3

 [2] Song S., Wood TK., 2020, Persister cells resuscitate via ribosome modification by 23S rRNA pseudouridine synthase RluD., Environ Microbiol 22(3):850-857

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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