RegulonDB RegulonDB 11.1: Gene Form
   

yjiM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjiN yjiM yjiL ytiA TSS_5145 (cluster) TSS_5145 (cluster) yjiLp3 yjiLp3 yjiLp2 yjiLp2

Gene      
Name: yjiM    Texpresso search in the literature
Synonym(s): ECK4326, G7932, b4335
Genome position(nucleotides): 4564699 <-- 4565850
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.56
External database links:  
ASAP:
 ABE-0014214
ECHOBASE:
 EB2462
ECOLIHUB:
 yjiM
OU-MICROARRAY:
 b4335
STRING:
 511145.b4335
COLOMBOS: yjiM


Product      
Name: putative dehydratase subunit
Synonym(s): YjiM
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 42.743
Isoelectric point: 4.787
Motif(s):
 
Type Positions Sequence Comment
40 -> 383 CTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRALANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRPRILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.7 - central intermediary metabolism --> 1.7.1 - unassigned reversible reactions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016829 - lyase activity
biological_process GO:0006974 - cellular response to DNA damage stimulus
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P39384
DIP:
 DIP-12639N
ECOCYC:
 G7932-MONOMER
ECOLIWIKI:
 b4335
INTERPRO:
 IPR010327
PFAM:
 PF06050
PRIDE:
 P39384
REFSEQ:
 NP_418755
SMR:
 P39384
UNIPROT:
 P39384


Operon      
Name: yjiML         
Operon arrangement:
Transcription unit        Promoter
yjiML


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yjiLp2 4564793 reverse nd [COMP-AINF] [1]
  promoter yjiLp3 4564802 reverse nd [COMP-AINF] [1]
  promoter TSS_5145 (cluster) 4565889 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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