Gene
Name:	yjiR
Synonym(s):	ECK4331, G7936, b4340
Genome position(nucleotides):	4570162 <-- 4571574
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	55.06
External database links:

ASAP:	ABE-0014232
ECHOBASE:	EB2466
ECOLIHUB:	yjiR
OU-MICROARRAY:	b4340
STRING:	511145.b4340
COLOMBOS:	yjiR

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_5146	4569651	forward	nd	[RS-EPT-CBR]	[4]
promoter	yjiSp3	4571705	forward	nd	[COMP-AINF]	[5]
promoter	yjiSp4	4571720	forward	nd	[COMP-AINF]	[5]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[COMP-AINF] Inferred computationally without human oversight

Reference(s)
[1] Kingston AW., Roussel-Rossin C., Dupont C., Raleigh EA., 2015, Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12., PLoS One 10(7):e0130813
[2] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47
[3] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[5] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

RNA cis-regulatory element

Attenuation:	Translational