RegulonDB RegulonDB 11.1: Gene Form
   

dgoD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dgoT dgoD dgoK dgoA cbrA dgoR terminator

Gene      
Name: dgoD    Texpresso search in the literature
Synonym(s): ECK3684, GB4478, b3692, b4478, yidU
Genome position(nucleotides): 3871850 <-- 3872998
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.83
External database links:  
ASAP:
 ABE-0174106
CGSC:
 859
ECHOBASE:
 EB4309
ECOLIHUB:
 dgoD
OU-MICROARRAY:
 b3692
STRING:
 511145.b4478
COLOMBOS: dgoD


Product      
Name: D-galactonate dehydratase
Synonym(s): DgoD, YidU
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 42.523
Isoelectric point: 5.067
Motif(s):
 
Type Positions Sequence Comment
15 -> 107 WMFLKIETDEGVVGWGEPVIEGRARTVEAAVHELGDYLIGQDPSRINDLWQVMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMG
135 -> 355 LREIGFDTFKLNGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAEYYPKLAAQTHIPLAAGERMFSRFDFKRVLEAGGISILQPDLSHAGGITECYKIAGMAEAYDVTLAPHCPLGPIALAACLHIDFVSYNAVLQEQSMGIHYNKGAELLDFVKNKEDFSMVGGFFKPLTKPGLGVEIDEA
137 -> 137 E UniProt: In Ref. 1; AAA62044..
185 -> 185 H UniProt: Loss of activity..
285 -> 285 H UniProt: Loss of activity..

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016829 - lyase activity
GO:0046872 - metal ion binding
GO:0008869 - galactonate dehydratase activity
GO:0000287 - magnesium ion binding
biological_process GO:0009063 - cellular amino acid catabolic process
GO:0034194 - D-galactonate catabolic process
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 Q6BF17
ECOCYC:
 GALACTONATE-DEHYDRATASE-MONOMER
ECOLIWIKI:
 b4478
INTERPRO:
 IPR036849
INTERPRO:
 IPR034593
INTERPRO:
 IPR029065
INTERPRO:
 IPR029017
INTERPRO:
 IPR023592
INTERPRO:
 IPR018110
INTERPRO:
 IPR013342
INTERPRO:
 IPR013341
MODBASE:
 Q6BF17
PANTHER:
 PTHR48080
PFAM:
 PF02746
PFAM:
 PF13378
PRIDE:
 Q6BF17
PRODB:
 PRO_000022434
PROSITE:
 PS00908
PROSITE:
 PS00909
REFSEQ:
 YP_026237
SMART:
 SM00922
SMR:
 Q6BF17
UNIPROT:
 Q6BF17


Operon      
Name: dgoRKADT         
Operon arrangement:
Transcription unit        Promoter
dgoRKADT


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: DgoR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB