RegulonDB RegulonDB 10.10: Gene Form
   

istR-1 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

istR tisA ivbL istR-1 tisB LexA CRP IstR-2 IstR-1 IstR-2 IstR-1 ppGpp anti-anti-terminator anti-terminator terminator anti-anti-terminator anti-terminator TSS_4252 TSS_4252 tisBp tisBp istR-2p istR-2p istR-1p istR-1p ivbLp ivbLp TSS_4251 TSS_4251

Gene      
Name: istR-1    Texpresso search in the literature
Synonym(s): G0-10202
Type: Phantom Gene
Genome position(nucleotides): 3853118 <-- 3853192 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.67
External database links:  
ECOLIHUB:
 istR-1
COLOMBOS: istR-1


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4251 3853016 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4252 3853442 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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