RegulonDB RegulonDB 11.1: Gene Form
   

ymjC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

mpaA ymjC ymjD ycjG TSS_1752 TSS_1752 mpaAp4 mpaAp4 mpaAp4 mpaAp4 mpaAp2 mpaAp2 TSS_1751 TSS_1751 TSS_1750 TSS_1750

Gene      
Name: ymjC    Texpresso search in the literature
Synonym(s): ECK1323, G0-10446, b4525
Genome position(nucleotides): 1390680 <-- 1390862
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 39.89
External database links:  
ASAP:
 ABE-0285046
ECHOBASE:
 EB4394
ECOLIHUB:
 ymjC
STRING:
 316407.85674906
COLOMBOS: ymjC


Product      
Name: putative uncharacterized protein YmjC
Synonym(s): YmjC
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 6.725
Isoelectric point: 11.535
Motif(s):
 
Type Positions Sequence Comment
40 -> 60 HKPYPTNKMQTTSGKKVIQDR UniProt: Disordered; Sequence Annotation Type: region of interest.
44 -> 60 PTNKMQTTSGKKVIQDR UniProt: Polar residues; Sequence Annotation Type: compositionally biased region.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 Q2EER5
ECOCYC:
 MONOMER0-2668
ECOLIWIKI:
 b4525
INTERPRO:
 IPR036291
PRIDE:
 Q2EER5
SMR:
 Q2EER5
UNIPROT:
 Q2EER5


Operon      
Name: ycjY-ymjDC-mpaA         
Operon arrangement:
Transcription unit        Promoter
ycjY
ycjY-ymjDC-mpaA
mpaA
ymjC-mpaA


Transcriptional Regulation      
Display Regulation             
Repressed by: PgrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1750 1390618 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1751 1390623 reverse nd [RS-EPT-CBR] [1]
  promoter mpaAp2 1390637 reverse nd [COMP-AINF] [2]
  promoter mpaAp4 1390639 reverse nd [COMP-AINF] [2]
  promoter mpaAp4 1390639 reverse nd [COMP-AINF] [2]
  promoter TSS_1752 1390681 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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