RegulonDB RegulonDB 11.1: Gene Form
   

ynfP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

intQ rspB ydfE insD7 ydfD ynfP dicB TSS_1869 TSS_1869

Gene      
Name: ynfP    Texpresso search in the literature
Synonym(s): ECK1574, G0-10559, b4534, ydfJ_1
Genome position(nucleotides): 1652728 <-- 1652838
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 42.34
External database links:  
ASAP:
 ABE-0285055
ASAP:
 ABE-0285155
ECOLIHUB:
 ynfP
COLOMBOS: ynfP


Product      
Name: protein YnfP
Synonym(s): YnfP
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 4.039
Isoelectric point: 7.527
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0DPP1
ECOCYC:
 MONOMER0-4428
ECOLIWIKI:
 b4534
UNIPROT:
 P0DPP1


Operon      
Name: ynfP         
Operon arrangement:
Transcription unit        Promoter
ynfP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1869 1651862 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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