RegulonDB RegulonDB 11.1: Gene Form
   

ypaB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfaL nrdA ypaB NrdR NrdR DnaA DnaA DnaA Fis CRP Fis ArgP ArgP Fis ArgP ArgP Fis ArgP Fis ArgP H-NS H-NS terminator anti-anti-terminator anti-terminator TSS_2513 TSS_2513 TSS_2512 TSS_2512 TSS_2511 TSS_2511 TSS_2510 TSS_2510 TSS_2509 TSS_2509 nrdAp nrdAp yfaLp7 yfaLp7 yfaLp3 yfaLp3 yfaLp1 yfaLp1 yfaLp8 yfaLp8

Gene      
Name: ypaB    Texpresso search in the literature
Synonym(s): ECK4414, G0-10596, b4605
Genome position(nucleotides): 2344594 <-- 2344737
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 42.36
External database links:  
ASAP:
 ABE-0285188
ECOLIHUB:
 ypaB
COLOMBOS: ypaB


Product      
Name: protein YpaB
Synonym(s): YpaB
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 5.325
Isoelectric point: 11.286
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-2824
ECOLIWIKI:
 b4605


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfaLp8 2344207 reverse nd [COMP-AINF] [1]
  promoter yfaLp1 2344218 reverse nd [COMP-AINF] [1]
  promoter yfaLp3 2344265 reverse nd [COMP-AINF] [1]
  promoter yfaLp7 2344284 reverse nd [COMP-AINF] [1]
  promoter TSS_2509 2344861 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2510 2344875 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2511 2345253 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2512 2345987 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2513 2346007 forward nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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