RegulonDB RegulonDB 11.1: Gene Form
   

ythA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insI3 nanY yjhE yjhD ythA anti-anti-terminator anti-terminator terminator terminator terminator TSS_5123 TSS_5123

Gene      
Name: ythA    Texpresso search in the literature
Synonym(s): ECK4434, G0-10616, b4655
Genome position(nucleotides): 4506448 --> 4506573
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 30.95
External database links:  
ECOLIHUB:
 ythA
STRING:
 511145.b4655
COLOMBOS: ythA


Product      
Name: KpLE2 phage-like element; uncharacterized protein YthA
Synonym(s): YthA
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 4.779
Isoelectric point: 9.589
Motif(s):
 
Type Positions Sequence Comment
22 -> 40 SLKTNLIFFFLCVFVPHMA

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 A8DYQ1
ECOCYC:
 MONOMER0-2840
ECOLIWIKI:
 b4655
PRIDE:
 A8DYQ1
REFSEQ:
 YP_001491548
UNIPROT:
 A8DYQ1


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5123 4507785 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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