RegulonDB RegulonDB 11.1: Gene Form
   

yobI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ruvA yebB yobI LexA LexA LexA LexA yebBp2 yebBp2 yebBp1 yebBp1 ruvAp1 ruvAp1 ruvAp2 ruvAp2 TSS_2211 TSS_2211 ruvBp4 ruvBp4 ruvBp3 ruvBp3 ruvBp1 ruvBp1

Gene      
Name: yobI    Texpresso search in the literature
Synonym(s): ECK4492, G0-10644, b4677
Genome position(nucleotides): 1946115 <-- 1946180
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 19.7
External database links:  
ASAP:
 ABE-0285220
ECOLIHUB:
 yobI
STRING:
 511145.b4677
COLOMBOS: yobI


Product      
Name: uncharacterized protein YobI
Synonym(s): YobI
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 2.665
Isoelectric point: 7.527
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 C1P604
ECOCYC:
 MONOMER0-2871
PRIDE:
 C1P604
REFSEQ:
 YP_002791244
UNIPROT:
 C1P604


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ruvBp1 1945366 reverse nd [COMP-AINF] [1]
  promoter ruvBp3 1945452 reverse nd [COMP-AINF] [1]
  promoter ruvBp4 1945544 reverse nd [COMP-AINF] [1]
  promoter TSS_2211 1946008 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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