RegulonDB RegulonDB 11.1: Gene Form
   

yoaK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dgcP yoaK yoaJ TSS_2126 TSS_2126 TSS_2125 TSS_2125 yoaFp10 yoaFp10

Gene      
Name: yoaK    Texpresso search in the literature
Synonym(s): ECK4491, G0-10649, b4676
Genome position(nucleotides): 1878773 --> 1878871
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 42.42
External database links:  
ASAP:
 ABE-0285219
ECOLIHUB:
 yoaK
STRING:
 511145.b4676
COLOMBOS: yoaK


Product      
Name: uncharacterized membrane protein YoaK
Synonym(s): YoaK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 3.458
Isoelectric point: 9.355
Motif(s):
 
Type Positions Sequence Comment
2 -> 25 RIGIIFPVVIFITAVVFLAWFFIG

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 C1P602
ECOCYC:
 MONOMER0-2876
PRIDE:
 C1P602
REFSEQ:
 YP_002791242
UNIPROT:
 C1P602


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yoaFp10 1877722 reverse nd [COMP-AINF] [1]
  promoter TSS_2125 1878552 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2126 1878589 forward nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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