RegulonDB RegulonDB 10.10: Gene Form
   

yshB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

glnG hemN glnA3\' yshB TSS_4547 (cluster) TSS_4547 (cluster) TSS_4546 (cluster) TSS_4546 (cluster) TSS_4545 TSS_4545

Gene      
Name: yshB    Texpresso search in the literature
Synonym(s): ECK4501, G0-10657, b4686
Genome position(nucleotides): 4053647 <-- 4053757 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.35
External database links:  
ASAP:
 ABE-0285229
ECOLIHUB:
 yshB
STRING:
 511145.b4686
COLOMBOS: yshB


Product      
Name: uncharacterized protein YshB
Synonym(s): YshB
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 3.618
Isoelectric point: 4.177
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-2884
REFSEQ:
 YP_002791260
UNIPROT:
 C1P620


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4545 4052097 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4546 (cluster) 4053777 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4547 (cluster) 4053810 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

RegulonDB