RegulonDB RegulonDB 10.10: Gene Form
   

ryeG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdI tfaS ryeG yodE yfdK yfdH terminator anti-terminator anti-anti-terminator TSS_2661 TSS_2661 TSS_2660 TSS_2660 TSS_2659 (cluster) TSS_2659 (cluster) TSS_2658 TSS_2658

Gene      
Name: ryeG    Texpresso search in the literature
Synonym(s): G0-16635, IS118
Genome position(nucleotides): 2470472 <-- 2470665 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 42.78


Product      
Name: small RNA RyeG
Synonym(s): IS118, RyeG
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
biological_process GO:1900191 - negative regulation of single-species biofilm formation
GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Bak G., et al., 2015
[2] Mandin P., et al., 2010
External database links:  
ECOCYC:
 RNA0-387


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2658 2470649 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_2659 (cluster) 2470665 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_2660 2470691 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_2661 2470748 forward nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Bak G., Lee J., Suk S., Kim D., Young Lee J., Kim KS., Choi BS., Lee Y., 2015, Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli., Sci Rep 5:15287

 [2] Mandin P., Gottesman S., 2010, Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA., EMBO J 29(18):3094-107

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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