RegulonDB RegulonDB 10.10: Gene Form
   

mokA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insJK insK insJ cspA mokA hokA ysaE Cis-reg; thermoregulator TSS_4162 TSS_4162 insKp insKp hokAp6 hokAp6 insJp4 insJp4 TSS_4161 TSS_4161

Gene      
Name: mokA    Texpresso search in the literature
Synonym(s): ECK4448, G0-16663, b4647
Type: Pseudo Gene
Genome position(nucleotides): 3720448 <-- 3720632 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
37.84


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4161 3720104 forward nd [RS-EPT-CBR] [1]
  promoter insJp4 3720594 forward nd [ICWHO] [2]
  promoter hokAp6 3720810 reverse nd [ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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