RegulonDB RegulonDB 11.1: Gene Form
   

pspH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dnaB qorA pspG pspH ppGpp terminator anti-terminator alrp2 alrp2 alrp1 alrp1 qorAp qorAp TSS_4887 (cluster) TSS_4887 (cluster) dnaBp dnaBp

Gene      
Name: pspH    Texpresso search in the literature
Synonym(s): ECK4615, G0-16700, b4758
Genome position(nucleotides): 4263139 --> 4263249
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 42.34


Product      
Name: small regulatory RNA PspH
Synonym(s): PspH
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003723 - RNA binding
GO:0003729 - mRNA binding
biological_process GO:0050779 - RNA destabilization
Note(s): Note(s): ...[more].
Evidence: [EXP-IMP] Inferred from mutant phenotype
Reference(s): [1] Melamed S., et al., 2016
[2] Thomason MK., et al., 2015
External database links:  
ECOCYC:
 RNA0-400


Operon      
Name: pspGH         
Operon arrangement:
Transcription unit        Promoter
pspG


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4887 (cluster) 4264284 forward nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Melamed S., Peer A., Faigenbaum-Romm R., Gatt YE., Reiss N., Bar A., Altuvia Y., Argaman L., Margalit H., 2016, Global Mapping of Small RNA-Target Interactions in Bacteria., Mol Cell 63(5):884-97

 [2] Thomason MK., Bischler T., Eisenbart SK., Forstner KU., Zhang A., Herbig A., Nieselt K., Sharma CM., Storz G., 2015, Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli., J Bacteriol 197(1):18-28

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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