RegulonDB RegulonDB 10.8: Gene Form
   

ynaM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

uspF ynaE ynaM ttcC TSS_1782 TSS_1782 TSS_1781 TSS_1781 TSS_1780 TSS_1780 TSS_1779 TSS_1779 TSS_1778 TSS_1778 TSS_1777 TSS_1777

Gene      
Name: ynaM    Texpresso search in the literature
Synonym(s): ECK4601, G0-16738, b4744
Genome position(nucleotides): 1434293 <-- 1434406 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 34.21


Product      
Name: Rac prophage; protein YnaM
Synonym(s): YnaM
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 4.013
Isoelectric point: 7.541
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-4421
UNIPROT:
 P0DPO4


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1777 1434418 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1778 1434432 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1779 1434436 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1780 1434580 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1781 1434582 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1782 1434626 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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