RegulonDB RegulonDB 10.9: Gene Form
   

ynfT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydfJ ydfK ynfT anti-anti-terminator anti-terminator terminator ydfKp5 ydfKp5 TSS_1860 TSS_1860 TSS_1859 TSS_1859 TSS_1858 TSS_1858 TSS_1857 TSS_1857 TSS_1856 TSS_1856 TSS_1855 TSS_1855 TSS_1854 TSS_1854 ynfTp ynfTp TSS_1853 TSS_1853 TSS_1852 TSS_1852

Gene      
Name: ynfT    Texpresso search in the literature
Synonym(s): ECK4605, G0-16742, b4748
Genome position(nucleotides): 1632890 --> 1633003 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
34.21


Product      
Name: Qin prophage; protein YnfT
Synonym(s): YnfT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 4.013
Isoelectric point: 7.541
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4425
UNIPROT:
P0DPO8


Operon      
Name: ynfT-ydfK         
Operon arrangement:
Transcription unit        Promoter
yntF-ydfK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1852 1632714 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1853 1632716 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1854 1632860 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1855 1632862 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1856 1632864 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1857 1632866 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1858 1632868 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1859 1632871 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1860 1632878 forward nd [RS-EPT-CBR] [1]
  promoter ydfKp5 1632985 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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