RegulonDB RegulonDB 11.1: Gene Form
   

yadW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clcA yadS erpA yadW IscR RyhB TSS_300 TSS_300 erpAp erpAp TSS_298 TSS_298 TSS_297 TSS_297

Gene      
Name: yadW    Texpresso search in the literature
Synonym(s): ECK4585, G0-16723, b4728
Genome position(nucleotides): 176552 --> 176617
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 39.39


Product      
Name: protein YadW
Synonym(s): YadW
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 2.33
Isoelectric point: 4.253
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0DPM7
ECOCYC:
 MONOMER0-4405
UNIPROT:
 P0DPM7


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_297 176147 forward nd [RS-EPT-CBR] [1]
  promoter TSS_298 176558 forward nd [RS-EPT-CBR] [1]
  promoter TSS_300 176583 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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